RRepoGEO

REPOGEO REPORT · LITE

cBioPortal/cbioportal

Default branch master · commit 3a8a8111 · scanned 5/10/2026, 12:21:22 PM

GitHub: 1,003 stars · 853 forks

AI VISIBILITY SCORE
64 /100
Needs work
Category recall
1 / 2
Avg rank #2.0 when recommended
Rule findings
2 pass · 0 warn · 0 fail
Objective metadata checks
AI knows your name
2 / 3
Direct prompts that named your repo
HOW TO READ THIS REPORT

Action plan is what to do next — copy-pasteable changes prioritized by impact. Category visibility is the real GEO test: when a user asks an AI a brand-free question that should surface cBioPortal/cbioportal, does the AI actually recommend you — or your competitors? Objective checks verify the metadata signals AI engines weight first. Self-mention check detects whether AI even knows you exist by name.

Action plan — copy-paste fixes

3 prioritized changes generated by gemini-2.5-flash. Mark items done after you ship the fix.

OVERALL DIRECTION
  • highreadme#1
    Reposition the README's opening paragraph to emphasize 'platform' and 'precision medicine'

    Why:

    CURRENT
    The cBioPortal for Cancer Genomics provides visualization, analysis, and download of large-scale cancer genomics data sets.
    COPY-PASTE FIX
    The cBioPortal for Cancer Genomics is an open-source platform for visualizing, analyzing, and exploring large-scale cancer genomics and precision medicine data sets. It enables researchers and clinicians to manage, integrate, and interactively query multi-omics data.
  • mediumabout#2
    Expand the 'About' description to include 'platform' and 'precision medicine'

    Why:

    CURRENT
    cBioPortal for Cancer Genomics
    COPY-PASTE FIX
    An open-source platform for visualizing, analyzing, and exploring large-scale cancer genomics and precision medicine data.
  • lowtopics#3
    Add more specific topics related to data platform and multi-omics management

    Why:

    CURRENT
    cancer-genomics, precision-medicine, science, visualization
    COPY-PASTE FIX
    cancer-genomics, precision-medicine, science, visualization, genomic-data-platform, cancer-research-platform, multi-omics-data

Category GEO backends resolved for this scan: google/gemini-2.5-flash, deepseek/deepseek-v4-flash

Category visibility — the real GEO test

Brand-free queries asked to google/gemini-2.5-flash. Did AI recommend you, or someone else?

Same questions for every model — switch tabs to compare answers and rankings.

Recall
1 / 2
50% of queries surface cBioPortal/cbioportal
Avg rank
#2.0
Lower is better. #1 = top recommendation.
Share of voice
5%
Of all named tools, what % are you?
Top rival
igvteam/igv
Recommended in 1 of 2 queries
COMPETITOR LEADERBOARD
  1. igvteam/igv · recommended 1×
  2. ucscxena/xena-client · recommended 1×
  3. R/Bioconductor · recommended 1×
  4. GenomicRanges · recommended 1×
  5. Gviz · recommended 1×
  • CATEGORY QUERY
    What tools help visualize and analyze large-scale cancer genomics datasets for research?
    you: #2
    AI recommended (in order):
    1. IGV (Integrative Genomics Viewer) (igvteam/igv)
    2. cBioPortal for Cancer Genomics (cbioportal/cbioportal) ← you
    3. UCSC Xena (ucscxena/xena-client)
    4. R/Bioconductor
    5. GenomicRanges
    6. Gviz
    7. ComplexHeatmap (jokergoo/ComplexHeatmap)
    8. maftools (PoisonAlien/maftools)
    9. TCGAbiolinks (BioinformaticsFMRP/TCGAbiolinks)
    10. Tableau
    11. OncoPrint
    12. GATK (Genome Analysis Toolkit) (broadinstitute/gatk)
    Show full AI answer
  • CATEGORY QUERY
    How to set up a platform for managing and exploring precision medicine genomic data?
    you: not recommended
    AI recommended (in order):
    1. DNAnexus
    2. Seven Bridges Genomics
    3. Terra
    4. AWS HealthOmics
    5. Galaxy Project
    6. LabKey Server
    7. Genomenon Mastermind

    AI recommended 7 alternatives but never named cBioPortal/cbioportal. This is the gap to close.

    Show full AI answer

Objective checks

Rule-based audits of metadata signals AI engines weight most.

  • Metadata completeness
    pass

  • README presence
    pass

Self-mention check

Does AI even know your repo exists when asked about it directly?

  • Compared to common alternatives in this category, what is the core differentiator of cBioPortal/cbioportal?
    pass
    AI did not name cBioPortal/cbioportal — likely talking about a different project

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

  • If a team adopts cBioPortal/cbioportal in production, what risks or prerequisites should they evaluate first?
    pass
    AI named cBioPortal/cbioportal explicitly

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

  • In one sentence, what problem does the repo cBioPortal/cbioportal solve, and who is the primary audience?
    pass
    AI named cBioPortal/cbioportal explicitly

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

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MARKDOWN (README)
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