RRepoGEO

REPOGEO REPORT · LITE

crazyhottommy/getting-started-with-genomics-tools-and-resources

Default branch master · commit 49ecb31b · scanned 5/25/2026, 1:02:39 PM

GitHub: 1,383 stars · 364 forks

AI VISIBILITY SCORE
15 /100
Critical
Category recall
0 / 2
Not recommended in any query
Rule findings
1 pass · 1 warn · 0 fail
Objective metadata checks
AI knows your name
0 / 3
Direct prompts that named your repo
HOW TO READ THIS REPORT

Action plan is what to do next — copy-pasteable changes prioritized by impact. Category visibility is the real GEO test: when a user asks an AI a brand-free question that should surface crazyhottommy/getting-started-with-genomics-tools-and-resources, does the AI actually recommend you — or your competitors? Objective checks verify the metadata signals AI engines weight first. Self-mention check detects whether AI even knows you exist by name.

Action plan — copy-paste fixes

3 prioritized changes generated by gemini-2.5-flash. Mark items done after you ship the fix.

OVERALL DIRECTION
  • highlicense#1
    Add a LICENSE file to the repository

    Why:

    COPY-PASTE FIX
    Create a LICENSE file in the repository root with a standard open-source license (e.g., MIT, Apache-2.0, GPL-3.0) that best suits your project's intent.
  • highreadme#2
    Reposition the README's opening to clearly state the repo's purpose as a comprehensive guide

    Why:

    COPY-PASTE FIX
    Add a clear introductory sentence to the README, such as: 'This repository serves as a comprehensive, curated guide and resource collection for beginners and intermediate users looking to master Unix, R, and Python tools for genomics and data science.'
  • mediumtopics#3
    Expand repository topics to include 'guide' and 'resources'

    Why:

    CURRENT
    bioinformatics, cancer-genomics, data-science
    COPY-PASTE FIX
    bioinformatics, cancer-genomics, data-science, genomics-guide, bioinformatics-resources, computational-biology-tutorial

Category GEO backends resolved for this scan: google/gemini-2.5-flash, deepseek/deepseek-v4-flash

Category visibility — the real GEO test

Brand-free queries asked to google/gemini-2.5-flash. Did AI recommend you, or someone else?

Same questions for every model — switch tabs to compare answers and rankings.

Recall
0 / 2
0% of queries surface crazyhottommy/getting-started-with-genomics-tools-and-resources
Avg rank
—
Lower is better. #1 = top recommendation.
Share of voice
0%
Of all named tools, what % are you?
Top rival
Bioconductor
Recommended in 2 of 2 queries
COMPETITOR LEADERBOARD
  1. Bioconductor · recommended 2×
  2. Rosalind · recommended 1×
  3. Practical Computing for Biologists · recommended 1×
  4. Bioinformatics Data Skills · recommended 1×
  5. Coursera · recommended 1×
  • CATEGORY QUERY
    How to find a comprehensive guide for genomics and bioinformatics tools using R, Python, and Unix?
    you: not recommended
    AI recommended (in order):
    1. Bioconductor
    2. Rosalind
    3. Practical Computing for Biologists
    4. Bioinformatics Data Skills
    5. Coursera
    6. Genomic Data Science Specialization
    7. DataCamp
    8. edX
    9. Introduction to Bioinformatics
    10. GitHub
    11. Awesome Bioinformatics

    AI recommended 11 alternatives but never named crazyhottommy/getting-started-with-genomics-tools-and-resources. This is the gap to close.

    Show full AI answer
  • CATEGORY QUERY
    What are the best resources for genomic data visualization and handling large datasets in R?
    you: not recommended
    AI recommended (in order):
    1. Bioconductor
    2. Gviz
    3. ComplexHeatmap
    4. ggplot2
    5. GenomicRanges
    6. SummarizedExperiment
    7. trackViewer
    8. ggbio
    9. plotly
    10. data.table
    11. D3.js
    12. htmlwidgets
    13. r2d3

    AI recommended 13 alternatives but never named crazyhottommy/getting-started-with-genomics-tools-and-resources. This is the gap to close.

    Show full AI answer

Objective checks

Rule-based audits of metadata signals AI engines weight most.

  • Metadata completeness
    warn

    Suggestion:

  • README presence
    pass

Self-mention check

Does AI even know your repo exists when asked about it directly?

  • Compared to common alternatives in this category, what is the core differentiator of crazyhottommy/getting-started-with-genomics-tools-and-resources?
    pass
    AI did not name crazyhottommy/getting-started-with-genomics-tools-and-resources — likely talking about a different project

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

  • If a team adopts crazyhottommy/getting-started-with-genomics-tools-and-resources in production, what risks or prerequisites should they evaluate first?
    pass
    AI did not name crazyhottommy/getting-started-with-genomics-tools-and-resources — likely talking about a different project

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

  • In one sentence, what problem does the repo crazyhottommy/getting-started-with-genomics-tools-and-resources solve, and who is the primary audience?
    pass
    AI did not name crazyhottommy/getting-started-with-genomics-tools-and-resources — likely talking about a different project

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

Embed your GEO score

Drop this badge into the README of crazyhottommy/getting-started-with-genomics-tools-and-resources. It auto-updates whenever the report is rescanned and links back to the latest report — easy public proof that you care about AI discoverability.

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MARKDOWN (README)
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crazyhottommy/getting-started-with-genomics-tools-and-resources — Lite scans stay free; this card itemizes Pro deep limits vs Lite.

  • Deep reports10 / month
  • Brand-free category queries5 vs 2 in Lite
  • Prioritized action items8 vs 3 in Lite