RRepoGEO

REPOGEO REPORT · LITE

broadinstitute/gatk

Default branch master · commit e8c49f60 · scanned 5/14/2026, 7:17:26 AM

GitHub: 1,945 stars · 625 forks

AI VISIBILITY SCORE
33 /100
Critical
Category recall
0 / 2
Not recommended in any query
Rule findings
2 pass · 0 warn · 0 fail
Objective metadata checks
AI knows your name
2 / 3
Direct prompts that named your repo
HOW TO READ THIS REPORT

Action plan is what to do next — copy-pasteable changes prioritized by impact. Category visibility is the real GEO test: when a user asks an AI a brand-free question that should surface broadinstitute/gatk, does the AI actually recommend you — or your competitors? Objective checks verify the metadata signals AI engines weight first. Self-mention check detects whether AI even knows you exist by name.

Action plan — copy-paste fixes

2 prioritized changes generated by gemini-2.5-flash. Mark items done after you ship the fix.

OVERALL DIRECTION
  • mediumabout#1
    Enhance the repository description to highlight cloud/parallel processing

    Why:

    CURRENT
    Official code repository for GATK versions 4 and up
    COPY-PASTE FIX
    Official code repository for GATK versions 4 and up, enabling scalable genomic analysis on local clusters and cloud platforms like Google Cloud using Apache Spark.
  • lowreadme#2
    Add a 'Key Features' or 'Why GATK?' section to the README

    Why:

    COPY-PASTE FIX
    Add a new section, e.g., '## Key Features' or '## Why GATK?', starting with: 'GATK's core differentiator is its comprehensive and highly accurate 'Best Practices' workflow for germline variant discovery, developed and validated by the Broad Institute. It integrates sophisticated algorithms and provides a robust framework for genetic analysis.'

Category GEO backends resolved for this scan: google/gemini-2.5-flash, deepseek/deepseek-v4-flash

Category visibility — the real GEO test

Brand-free queries asked to google/gemini-2.5-flash. Did AI recommend you, or someone else?

Same questions for every model — switch tabs to compare answers and rankings.

Recall
0 / 2
0% of queries surface broadinstitute/gatk
Avg rank
—
Lower is better. #1 = top recommendation.
Share of voice
0%
Of all named tools, what % are you?
Top rival
GATK (Genome Analysis Toolkit)
Recommended in 1 of 2 queries
COMPETITOR LEADERBOARD
  1. GATK (Genome Analysis Toolkit) · recommended 1×
  2. FreeBayes · recommended 1×
  3. Samtools/BCFtools · recommended 1×
  4. DeepVariant · recommended 1×
  5. VarScan2 · recommended 1×
  • CATEGORY QUERY
    What open-source tools help identify genetic variations from high-throughput DNA sequencing data?
    you: not recommended
    AI recommended (in order):
    1. GATK (Genome Analysis Toolkit)
    2. FreeBayes
    3. Samtools/BCFtools
    4. DeepVariant
    5. VarScan2
    6. Platypus
    7. Strelka2

    AI recommended 7 alternatives but never named broadinstitute/gatk. This is the gap to close.

    Show full AI answer
  • CATEGORY QUERY
    How to efficiently analyze massive genomic datasets using parallel processing on cloud infrastructure?
    you: not recommended
    AI recommended (in order):
    1. Terra
    2. DNAnexus Apollo Platform
    3. AWS HealthOmics
    4. Nextflow (nextflow-io/nextflow)
    5. AWS Batch
    6. Google Life Sciences API
    7. Azure Batch
    8. Cromwell (broadinstitute/cromwell)
    9. Apache Spark (apache/spark)
    10. Hail (hail-is/hail)
    11. ADAM (bigdatagenomics/adam)
    12. Databricks
    13. Amazon EMR
    14. Google Cloud Dataproc

    AI recommended 14 alternatives but never named broadinstitute/gatk. This is the gap to close.

    Show full AI answer

Objective checks

Rule-based audits of metadata signals AI engines weight most.

  • Metadata completeness
    pass

  • README presence
    pass

Self-mention check

Does AI even know your repo exists when asked about it directly?

  • Compared to common alternatives in this category, what is the core differentiator of broadinstitute/gatk?
    pass
    AI did not name broadinstitute/gatk — likely talking about a different project

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

  • If a team adopts broadinstitute/gatk in production, what risks or prerequisites should they evaluate first?
    pass
    AI named broadinstitute/gatk explicitly

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

  • In one sentence, what problem does the repo broadinstitute/gatk solve, and who is the primary audience?
    pass
    AI named broadinstitute/gatk explicitly

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

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broadinstitute/gatk — Lite scans stay free; this card itemizes Pro deep limits vs Lite.

  • Deep reports10 / month
  • Brand-free category queries5 vs 2 in Lite
  • Prioritized action items8 vs 3 in Lite