RRepoGEO

REPOGEO REPORT · LITE

broadinstitute/gatk

Default branch master · commit f0941754 · scanned 6/24/2026, 7:42:06 PM

GitHub: 1,968 stars · 628 forks

Scan history for this repo

Score trend below includes all ready runs (older left, newer right; scroll horizontally if needed). The table is collapsed by default—expand for newest-first rows, 10 per page.

Score trend (left → right: older → newer)

3 ready scans. Expand the table below for newest-first rows (10 per page, paginated).

AI VISIBILITY SCORE
40 /100
Critical
Category recall
0 / 2
Not recommended in any query
Rule findings
2 pass · 0 warn · 0 fail
Objective metadata checks
AI knows your name
3 / 3
Direct prompts that named your repo
HOW TO READ THIS REPORT

Action plan is what to do next — copy-pasteable changes prioritized by impact. Category visibility is the real GEO test: when a user asks an AI a brand-free question that should surface broadinstitute/gatk, does the AI actually recommend you — or your competitors? Objective checks verify the metadata signals AI engines weight first. Self-mention check detects whether AI even knows you exist by name.

Action plan — copy-paste fixes

3 prioritized changes generated by gemini-2.5-flash. Mark items done after you ship the fix.

OVERALL DIRECTION
  • highreadme#1
    Reposition README opening to explicitly state this is the official GATK repository

    Why:

    CURRENT
    Please see the GATK website, where you can download a precompiled executable, read documentation, ask questions, and receive technical support. For GitHub basics, see here.### GATK 4 This repository contains the next generation of the Genome Analysis Toolkit (GATK).
    COPY-PASTE FIX
    This is the official GitHub repository for the Genome Analysis Toolkit (GATK) versions 4 and up, developed by the Broad Institute. GATK provides a comprehensive suite of tools for variant discovery and genotyping from high-throughput sequencing data, primarily serving bioinformaticians and researchers in genomics. Please see the GATK website for documentation, downloads, and support.
  • mediumabout#2
    Enhance the repository description to highlight Apache Spark integration

    Why:

    CURRENT
    Official code repository for GATK versions 4 and up
    COPY-PASTE FIX
    Official code repository for GATK versions 4 and up, providing a comprehensive toolkit for genomic variant discovery and genotyping, including tools optimized for large-scale analysis with Apache Spark.
  • lowreadme#3
    Clarify the license statement in the README to align with the LICENSE.TXT file

    Why:

    CURRENT
    The contents of this repository are 100% open source and released under the Apache 2.0 license (see LICENSE.TXT).
    COPY-PASTE FIX
    The contents of this repository are 100% open source. Please refer to the LICENSE.TXT file for the specific terms and conditions, which are based on the Apache 2.0 license.

Category GEO backends resolved for this scan: google/gemini-2.5-flash, deepseek/deepseek-v4-flash

Category visibility — the real GEO test

Brand-free queries asked to google/gemini-2.5-flash. Did AI recommend you, or someone else?

Same questions for every model — switch tabs to compare answers and rankings.

Recall
0 / 2
0% of queries surface broadinstitute/gatk
Avg rank
—
Lower is better. #1 = top recommendation.
Share of voice
0%
Of all named tools, what % are you?
Top rival
GATK (Genome Analysis Toolkit)
Recommended in 1 of 2 queries
COMPETITOR LEADERBOARD
  1. GATK (Genome Analysis Toolkit) · recommended 1×
  2. BCFtools · recommended 1×
  3. DeepVariant · recommended 1×
  4. ANNOVAR (Annotate Variation) · recommended 1×
  5. SnpEff · recommended 1×
  • CATEGORY QUERY
    What tools are available for analyzing next-generation sequencing data for genomic variants?
    you: not recommended
    AI recommended (in order):
    1. GATK (Genome Analysis Toolkit)
    2. BCFtools
    3. DeepVariant
    4. ANNOVAR (Annotate Variation)
    5. SnpEff
    6. VEP (Variant Effect Predictor)
    7. Plink
    8. VarScan 2

    AI recommended 8 alternatives but never named broadinstitute/gatk. This is the gap to close.

    Show full AI answer
  • CATEGORY QUERY
    Looking for a toolkit to perform large-scale genomic data analysis using Apache Spark.
    you: not recommended
    AI recommended (in order):
    1. Glow
    2. ADAM
    3. Hail
    4. Spark-Genomics
    5. BigGenomics

    AI recommended 5 alternatives but never named broadinstitute/gatk. This is the gap to close.

    Show full AI answer

Objective checks

Rule-based audits of metadata signals AI engines weight most.

  • Metadata completeness
    pass

  • README presence
    pass

Self-mention check

Does AI even know your repo exists when asked about it directly?

  • Compared to common alternatives in this category, what is the core differentiator of broadinstitute/gatk?
    pass
    AI named broadinstitute/gatk explicitly

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

  • If a team adopts broadinstitute/gatk in production, what risks or prerequisites should they evaluate first?
    pass
    AI named broadinstitute/gatk explicitly

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

  • In one sentence, what problem does the repo broadinstitute/gatk solve, and who is the primary audience?
    pass
    AI named broadinstitute/gatk explicitly

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

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broadinstitute/gatk — Lite scans stay free; this card itemizes Pro deep limits vs Lite.

  • Deep reports10 / month
  • Brand-free category queries5 vs 2 in Lite
  • Prioritized action items8 vs 3 in Lite