RRepoGEO

REPOGEO REPORT · LITE

bowang-lab/scGPT

Default branch main · commit cebd6fae · scanned 6/26/2026, 7:41:47 AM

GitHub: 1,587 stars · 334 forks

Scan history for this repo

Score trend below includes all ready runs (older left, newer right; scroll horizontally if needed). The table is collapsed by default—expand for newest-first rows, 10 per page.

Score trend (left → right: older → newer)

3 ready scans. Expand the table below for newest-first rows (10 per page, paginated).

AI VISIBILITY SCORE
87 /100
Healthy
Category recall
2 / 2
Avg rank #1.0 when recommended
Rule findings
1 pass · 1 warn · 0 fail
Objective metadata checks
AI knows your name
3 / 3
Direct prompts that named your repo
HOW TO READ THIS REPORT

Action plan is what to do next — copy-pasteable changes prioritized by impact. Category visibility is the real GEO test: when a user asks an AI a brand-free question that should surface bowang-lab/scGPT, does the AI actually recommend you — or your competitors? Objective checks verify the metadata signals AI engines weight first. Self-mention check detects whether AI even knows you exist by name.

Action plan — copy-paste fixes

2 prioritized changes generated by gemini-2.5-flash. Mark items done after you ship the fix.

OVERALL DIRECTION
  • highabout#1
    Add a concise description to the repository's About section

    Why:

    COPY-PASTE FIX
    scGPT is a foundation model for single-cell multi-omics data, applying generative AI to tasks like cell type annotation, gene perturbation prediction, and multi-modal integration.
  • lowreadme#2
    Explicitly state target audience and key applications in README introduction

    Why:

    CURRENT
    This is the official codebase for **scGPT: Towards Building a Foundation Model for Single-Cell Multi-omics Using Generative AI**.
    COPY-PASTE FIX
    This is the official codebase for **scGPT: Towards Building a Foundation Model for Single-Cell Multi-omics Using Generative AI**. It enables computational biologists and researchers to analyze and interpret complex single-cell data for tasks such as cell type annotation, gene perturbation prediction, and multi-modal integration.

Category GEO backends resolved for this scan: google/gemini-2.5-flash, deepseek/deepseek-v4-flash

Category visibility — the real GEO test

Brand-free queries asked to google/gemini-2.5-flash. Did AI recommend you, or someone else?

Same questions for every model — switch tabs to compare answers and rankings.

Recall
2 / 2
100% of queries surface bowang-lab/scGPT
Avg rank
#1.0
Lower is better. #1 = top recommendation.
Share of voice
13%
Of all named tools, what % are you?
Top rival
scVI
Recommended in 2 of 2 queries
COMPETITOR LEADERBOARD
  1. scVI · recommended 2×
  2. Geneformer · recommended 1×
  3. scMoMaT · recommended 1×
  4. UniPort · recommended 1×
  5. scArches · recommended 1×
  • CATEGORY QUERY
    How can I apply foundation models to analyze single-cell multi-omics data?
    you: #1
    AI recommended (in order):
    1. scGPT ← you
    2. Geneformer
    3. scMoMaT
    4. UniPort
    5. scArches
    6. MOFA+
    7. scVI
    8. totalVI
    9. scVAE
    Show full AI answer
  • CATEGORY QUERY
    What generative AI tools exist for single-cell sequencing data interpretation?
    you: #1
    AI recommended (in order):
    1. scGPT ← you
    2. scVI
    3. scGen
    4. CellOracle
    5. AlphaFold
    6. OpenFold
    7. ChatGPT/GPT-4
    Show full AI answer

Objective checks

Rule-based audits of metadata signals AI engines weight most.

  • Metadata completeness
    warn

    Suggestion:

  • README presence
    pass

Self-mention check

Does AI even know your repo exists when asked about it directly?

  • Compared to common alternatives in this category, what is the core differentiator of bowang-lab/scGPT?
    pass
    AI named bowang-lab/scGPT explicitly

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

  • If a team adopts bowang-lab/scGPT in production, what risks or prerequisites should they evaluate first?
    pass
    AI named bowang-lab/scGPT explicitly

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

  • In one sentence, what problem does the repo bowang-lab/scGPT solve, and who is the primary audience?
    pass
    AI named bowang-lab/scGPT explicitly

    AI answers can be confidently wrong. Read for accuracy: does it match your actual tech stack, audience, and differentiator?

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bowang-lab/scGPT — Lite scans stay free; this card itemizes Pro deep limits vs Lite.

  • Deep reports10 / month
  • Brand-free category queries5 vs 2 in Lite
  • Prioritized action items8 vs 3 in Lite